Marvin modules

A modules is a set of class files that is packed in a separate jar (not in the core jmarvin.jar). Marvin modules are downloaded at runtime, only as needed.

Module nameJar file Description
AbbrevGroupExportsjars/abbrevgroupexport.jarAbbreviated group export.
AtomIndexLabellersjars/atomlabellers.jarAtom index, displayed as a label.
Base64Exportsjars/base64export.jarBase64 export.
Base64Importsjars/base64import.jarBase64 import.
Clean2Dsjars/clean2d.jar2D cleaning.
Clean3Dsjars/clean3d.jar3D cleaning.
CmlExportsjars/cmlexport.jarCML export
CmlImportsjars/cmlimport.jarCML import
CxsmilesImportsjars/smilesimport.jarChemAxon Extended SMILES/SMARTS import.
Dearomatasjars/dearomata.jarDearomatization.
DocumentSettingssjars/documenthandling.jarDocument settings.
GzipExportsjars/gzipexport.jarGZIP export.
GzipImportsjars/gzipimport.jarGZIP import.
Hydrogenizesjars/hydrogenize.jarCreates explicit H atoms from implicit ones.
ImageExportsjars/imageexport.jarOff screen image creation support.
InchiExportsjars/inchiexport.jarIUPAC InChi export.
InchiImportsjars/inchiimport.jarIUPAC InChi import.
JpegExportsjars/jpegexport.jarJPEG image export.
LicenseManagersjars/Plugin.jarLicense manager.
MChartsjars/mchart.jarChart.
Mol2Exportsjars/mol2export.jarTripos Mol2 export.
Mol2Importsjars/mol2import.jarTripos Mol2 import.
MolExportsjars/molexport.jarMDL molfile and compressed molfile export.
MolImportsjars/molimport.jarMDL molfile and compressed molfile import.
MPolylineModulesjars/mpolylinemodule.jarPolyline drawing.
MrvExportsjars/mrvexport.jarMRV export.
MrvImportsjars/mrvimport.jarMRV import.
MsbmpExportsjars/msbmpexport.jarMS BMP export.
MTextBoxModulesjars/mtextboxmodule.jarTextbox drawing.
MyformatExportsjars/myformatexport.jarMyformat export.
MyformatImportsjars/myformatimport.jarMyformat import.
NullExportsjars/nullexport.jarExport module with null output.
Paritysjars/parity.jarParity.
PdbExportsjars/pdbexport.jarPDB export.
PdbImportsjars/pdbimport.jarPDB import.
PeptideExportsjars/peptideexport.jarPeptide export.
PeptideImportsjars/peptideimport.jarPeptide import.
PngExportsjars/pngexport.jarPNG export.
PovExportsjars/povexport.jarPOV export.
PpmExportsjars/ppmexport.jarPPM export.
SmartsAtomQuerifiersjars/smarts.jarPartial interpretation of smarts atoms.
Spacefillsjars/spacefill.jarSpacefill.
SuperatomSgroupCoordssjars/superatomsgroupcoords.jarRecalculates atom coordinates for residue contraction or expansion.
SvgExportsjars/svgexport.jarSVG export
SybylExportsjars/sybylexport.jarSybyl Export
SybylImportsjars/sybylimport.jarSybyl Import
Threedimsjars/threedim.jarThreedim.
VectGraphicsExportsjars/vectgraphicsexport.jarEMF and PDF export.
XyzExportsjars/xyzexport.jarXYZ export.
XyzImportsjars/xyzimport.jarXYZ import.
common.swing.AboutJVMsjars/common/swing/aboutjvm.jarAbout JVM dialog.
common.swing.EditMolfileFramesjars/common/swing/editmolfileframe.jarMolecule source window.
common.swing.ExceptionFramesjars/common/swing/exceptionframe.jarException window.
common.swing.FontAttrPanelsjars/common/swing/fontediting.jarFormat dialog.
common.swing.Helpsjars/common/swing/help.jarHelp window.
common.swing.LicenseHandlerDialogsjars/licensehandlerdialog.jarLicense hander dialog.
common.swing.LoadSavesjars/common/swing/loadsave.jarLoad/Save dialog.
common.swing.modules.RegenBondssjars/common/swing/regenbonds.jarDialog box with bond generation options. Selecting Edit/Bonds/Regenerate in the menu brings up this dialog.
common.swing.MolSelectionSmisjars/common/swing/molselectionsmi.jarCopy as SMILES.
common.swing.MolSelectionsjars/common/swing/molselection.jarCopy/Paste functionality.
common.swing.MultiMoleculeSavesjars/common/swing/multimoleculesave.jarSave more molecules.
common.swing.Preferencessjars/common/swing/preferences.jarPreferences dialog.
common.swing.Printsjars/common/swing/print.jarPrint functionality.
sketch.AtomActionssjars/sketch/edit.jarClean ligands.
sketch.AtomMappersjars/atommapper.jarAbbreviated group export.
sketch.LineSMsjars/sketch/linesm.jarLine drawing mode.
sketch.TextBoxSMsjars/sketch/boxsm.jarTextbox creating mode.
sketch.swing.AttachDataDialogsjars/sketch/swing/attachdatadialog.jarAttach data dialog box.
sketch.swing.GroupCreationDialogsjars/sketch/swing/groupcreationdialog.jarCreate group dialog.
sketch.swing.MObjectPropertiesDialogsjars/sketch/swing/mobjectpropertiesdialog.jarProperties dialog of graphical objects.
sketch.swing.MTextBoxEditorsjars/sketch/swing/textboxeditor.jarTextbox editor.
sketch.swing.PeriodicFramesjars/sketch/swing/periodicframe.jarPeriodic system window.
sketch.swing.RlogicDialogsjars/sketch/swing/rlogicdialog.jarRlogic dialog.
sketch.swing.SketchDnDsjars/sketch/swing/sketchdnd.jarDrag and Drop functionality in sketch.
sketch.swing.TemplateButtonDnDsjars/sketch/swing/templatebuttondnd.jarDrag and Drop for the molecule buttons.
sketch.swing.TemplateFrame.javasjars/sketch/swing/templateframe.jarTemplate window.
sketch.swing.TemplatePropertiesDialogsjars/sketch/swing/templatepropertiesdialog.jarProperties dialog for templates
view.NetscapeJavaScriptersjars/view/scripter.jarTo call JavaScript from Java.
view.swing.CleanTablesjars/view/swing/cleantable.jarClean the molecule table.
view.swing.GridBagViewsjars/view/swing/gridbagview.jarGridBagLayout-like viewer table handler.
view.swing.ImageViewFramesjars/view/swing/imageviewframe.jarImage viewer frame.
view.swing.LoadSavesjars/view/swing/loadsave.jarLoad/Save dialog for viewer.
view.swing.MolsFramesjars/view/swing/molsframe.jarDisplay multiple molecules.
view.swing.MViewAnimatorsjars/view/swing/mviewanimator.jarMolecule rotation in the viewer.
view.swing.MViewFramesjars/view/swing/mviewframe.jarMolecule viewer frame.
view.swing.MViewSketchsjars/view/swing/mviewsketch.jarMarvinView/MarvinSketch bridge.
view.swing.PrintViewsjars/view/swing/printview.jarPrint all molecules of a MarvinView.
view.swing.TableViewsjars/view/swing/tableview.jarJTable based viewer handle.
view.swing.ViewDnDsjars/view/swing/viewdnd.jarDrag and Drop for the viewer.
 

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